Important thing TODO, from today’s meeting: Create a validation set – Extract OMIM disease-gene links. Map OMIM genes to Entrez Gene. Map OMIM diseases to MeSH terms. Of these, the OMIM-MeSH is likely the hard part. I should do this by UMLS, but UMLS is the ugliest database I’ve ever seen. Must no longer be [...]
Archive for the ‘UMLS’ Category
Focus: MeSH to OMIM Disease Mapping
Posted in todo, UMLS on October 5, 2007 | Leave a Comment »
Creating local UMLS repository
Posted in UMLS on September 13, 2007 | Leave a Comment »
Selected for the first pass the following subset of the UMLS: MeSH, ICD9-CM, ICD10, SNOMED CT, Gene Ontology and HUGO gene nomenclature. Ignored the non-english bits for now, and didn’t tinker with the suppressibility. After that…it seems that it’s off to the races. Also currently running checks on the mysql databases. Looks like there’s something [...]
