Important thing TODO, from today’s meeting: Create a validation set – Extract OMIM disease-gene links. Map OMIM genes to Entrez Gene. Map OMIM diseases to MeSH terms.
Of these, the OMIM-MeSH is likely the hard part. I should do this by UMLS, but UMLS is the ugliest database I’ve ever seen. Must no longer be afraid…
Archive for the ‘UMLS’ Category
Focus: MeSH to OMIM Disease Mapping
Posted in UMLS, todo on October 5, 2007 | Leave a Comment »
Creating local UMLS repository
Posted in UMLS on September 13, 2007 | Leave a Comment »
Selected for the first pass the following subset of the UMLS: MeSH, ICD9-CM, ICD10, SNOMED CT, Gene Ontology and HUGO gene nomenclature. Ignored the non-english bits for now, and didn’t tinker with the suppressibility. After that…it seems that it’s off to the races.
Also currently running checks on the mysql databases. [...]
