Finally feel like I’m getting close to generating the co-occurrence numbers for MeSH in PubMed articles. In some sense, the computations are all but done – all I’m doing now is getting grand totals. There are a lot of totals to do… It’s currently at “Food Additives” … On the upside, I was super worried [...]
Archive for the ‘cluster’ Category
Co-occurring MeSH term computation…Almost…
Posted in cluster, MeSH on April 1, 2008 | Leave a Comment »
Sun Grid Engine – Using Makefiles
Posted in cluster on March 18, 2008 | Leave a Comment »
Moving away from big script files and towards Makefiles. This should simplify some of the coding (no more need to write big loops!) as well as making it very easily parallelisable: SGE has a specially designed version of make (qmake) that will automatically farm out jobs. Makefiles also make it easy to write “pipelines” with [...]
