MDMR – Nicholas Schork Multivariate distance matrix regression. Explain a gene distance matrix using parameters (e.g. micro-array chip, or for us, MeSH annotation=disease) BioPython function exists.
http://www.pnas.org/content/103/51/19430.abstract?ck=nck
Profile comparison used to make the distance matrix? Also possible – look for pubmed co-citation (an independant distance matrix, not involving MeSH?)
Regenerating generif.
BG-profiles computed, appear to be less effective. Some issues computing digenei (old) using BG
Figured out Makefile choking on generating .mk files which aren’t found by subsequent steps even though they are requirements – instead have them generated in situ.
