Ballpark runtime figures – I took about 30 nuclear receptor genes and ran those against the 4000 MeSH Disease profiles – this took about 30 minutes. Extrapolating to the approximately 10000 human genes with GeneRIFs makes the runtime about 7 days.
Plan for tomorrow is to pull out an example for and mock up the distance [...]
Archive for April, 2008
Towards Profile comparison results
Posted in progress, todo on April 22, 2008 | Leave a Comment »
Progress Report and TODO List
Posted in Uncategorized on April 4, 2008 | Leave a Comment »
Oops…Someone has been forgetting to post these here.
Anyways
We’ve got MeSH Co-occurrence (i.e. the data for creating MeSH profiles for Disease terms) computed. The nice trickiness I’ve gotten for this dataset (which doesn’t seem to show up in anyone else’s dataset, ha!) is that it follows each MeSH term up the hierarchy and flags all the [...]
Co-occurring MeSH term computation…Almost…
Posted in MeSH, cluster on April 1, 2008 | Leave a Comment »
Finally feel like I’m getting close to generating the co-occurrence numbers for MeSH in PubMed articles. In some sense, the computations are all but done – all I’m doing now is getting grand totals.
There are a lot of totals to do… It’s currently at “Food Additives” …
On the upside, I was super worried about how [...]
